SE2650049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7017
  • Oryza sativa
  • SE2650049
  • PIF/harbinger
  • To21
  • Chr01:3335854-3336172
  • GGC
  • GGCCTTGTTCGGTTACGTCTGGATTCAATCCGGGCCAGGAATGACAAGTATAGTAAGAAATTTATGATAGATACAATGAGAGACCGGGATTTTTTCGGGCCGGGAACTAATTTACTCATGATAGGGACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                    A                                                    -TTT             A                        CAAAACAT    --      T    ACCTCT
GGCCTTGTTCGGTTACGTCTGGATTCAATCCGGGCC GGAATGACAAGTATAGTAAGAAATTTATGATAGATACAATGAGAGACCGGGA    TTTCGGGCCGGGA CTAATTTACTCATGATAGGGACAA        CCGG  ATTAGT CCAC      
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||||||        ||||  |||||| ||||       
CCGGAACAGGCCAATGCGGGCCTAAGTTAGGCCCGG CCTTACTGTTCATGTCATTCTTTAAATACTATCTATGTTACTCTCTGGCCCT    AAGGCCCGGCCCT GGTTAAATGAGTACTATCTCTGTT        GGCC  TAGTTA GGTG      
                                    C                                                    TAAT             C                        -ATTCTCT    CT      -    ATCAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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