Plant MITE

SE2650050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7018
Oryza sativa
SE2650050
PIF/harbinger
To22
Chr12:23532098-23532341
GGT
GGTGGTGTTCTTTTCTTCTGAAGG

Secondary structure and sequence

TSD TIR

5'

3'

   GG           T    -   -TAAA             T        CAAAAC     -----G     AACGTATTATTGATTGAGTTTTAATTATTACAAACTTGAAAAATAGATTAATATG
GGT  TGTTCTTTTCT CTGA AGG     GATGGAGATTAAG TTTTTATG      GATAT      GTATT                                                       
|||  ||||||||||| |||| |||     ||||||||||||| ||||||||      |||||      |||||                                                        
CCA  GCAAGAAAAGA GATT TTC     CTATTTCTAATTT AAAAGTAC      CGTGC      TTTGC                                                       
   GG           -    A   TCAGC             T        ------     GAAAAG     CAATTTGTTATGCAAAGCACGCTTTTGAAAGATATATTTTTAACGAGATTTTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650050

GGTGGTGTTCTTTTCTTCTGAAGGTAAAGATGGAGATTAAGTTTTTTATGCAAAACGATATGGTATTAACGTATTATTGATTGAGTTTTAATTATTACAAACTTGAAAAATAGATTAATATGATATTTTAGAGCAATTTTTATATAGAAAGTTTTCGCACGAAACGTATTGTTTAACCGTTTGAAAAGCGTGCCATGAAAATTTTAATCTTTATCCGACTCTTATTAGAGAAAAGAACGGGACC

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