Plant MITE

SE2650051

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7019
Oryza sativa
SE2650051
PIF/harbinger
To23
Chr05:16735890-16736204
GGG
GGGCTCGTTCG

Secondary structure and sequence

TSD TIR

5'

3'

  G  C     GTTCATAA  T  T     ------             AAAAC    AAATACTACAGGAATACATGTGCAAACCTATGGATTGAAAAATACAGGAATTTTTCCTATGTTGTTGAGCAAGCTAACCAAATGAATACAAACATTAGGTTGGAG
GG CT GTTCG        GA TT CAAAA      CGTAGGAATAGGA     GTAG                                                                                                         
|| || |||||        || || |||||      |||||||||||||     ||||                                                                                                          
CC GA TAAGC        CT AA GTTTT      GTATCTTTATCCT     TACC                                                                                                         
  G  A     AAAATTTC  T  T     CTTTTC             -----    TAAAATTTGATGGTAAGTAAAGTATCCTTACGTGGTATCCTTTTGACATCCTTTCAAAAGGTAAGGAGATAAAAGCTTCCTTTTCGTATCCTTTTTTTATTAGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650051

GGGCTCGTTCGGTTCATAAGATTTTCAAAACGTAGGAATAGGAAAAACGTAGAAATACTACAGGAATACATGTGCAAACCTATGGATTGAAAAATACAGGAATTTTTCCTATGTTGTTGAGCAAGCTAACCAAATGAATACAAACATTAGGTTGGAGTGGATTATTTTTTTCCTATGCTTTTCCTTCGAAAATAGAGGAATGGAAAACTTTCCTACAGTTTTCCTATGGTGCATTCCTATGAAATGAATGGTAGTTTAAAATCCATTCCTATTTCTATGCTTTTCTTTTGTAATTCCTTTAAAACGAATAAGGCC

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