SE2650053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7021
  • Oryza sativa
  • SE2650053
  • PIF/harbinger
  • To25
  • Chr08:17334872-17335308
  • GGG
  • GGGCTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
  G    TTTAAA        TTGA       T     CAAAAAAAAACTC        TATAGGAAATCATAGGTAAAACTAATGGTTGAAAAACATGGGAAAATTATAGGAACGATCGTTTGATTGATACAAAGGAAAAACATAGGAATGTTAAGTATTAAGTTAATAGCCATCAAAATTTGAATGGTTTTATGAGGGTAAACATTGTCTTTCAATAGTGTTT
GG CTCC      TCATAGGA    AAAAATG AGGAA             AGGAATAG                                                                                                                                                                      
|| ||||      ||||||||    ||||||| |||||             ||||||||                                                                                                                                                                       
CC GAGG      AGTATCCT    TTTTTAC TCCTT             TATCCTAG                                                                                                                                                                      
  G    TAGCTA        ----       C     ---------TTTG        TTATTAGGATACCCTAAACCATGACAAGTAGGGAAACTAAACATCCTTAACTTATATCCTTTACGTACCCTTTTAAAGGATACTGGTACTAAAATTCCCTTAAGGTATCCTTTTAATTGTAGGTGGAACTCGAGTAAAAAGAAAAGGATACTCATCCTAGCTCCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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