SE2650058

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7026
  • Oryza sativa
  • SE2650058
  • PIF/harbinger
  • To29
  • Chr06:3297511-3298184
  • GGC
  • GGCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
      -------------         --   -  -    ---  CCAACTCCAATTTATCTAGAGCTGGAGCTGTGCCAAACGGTACAAATTCTCTGTTTTTTGGAGCGGAGTTGGCAGAGCAGCTCCATAAATTTGTACTACGGGGATGGAGCTGGGTTTTTGCTGCTCCAGAGCTCCACTCCACCCTAAAAGACCCACTACCCTTTAAAATTTTGATGTATTTACACAGAAATGCCATTGAACTACCCCTAAACTCCTCCTCCCATCCTCTCTCTCCTCTCCCATCTTCTCCGGCAAGATTCGGCGGCAACCGACGGCGGGCGGGCTGGCGGCGGCGGCGCAC
GGCCCC             GTTTGGCAC  AGC TC TAGC   TC                                                                                                                                                                                                                                                                                                             
||||||             |||||||||  ||| || ||||   ||                                                                                                                                                                                                                                                                                                              
CCGGGG             GGTTTGAGG  GAG GT GAGA   GA                                                                                                                                                                                                                                                                                                             
      CAAACCATGCCGA         TT   A  C    TTT  GGATGAGGTCAACTTCGATCGAGGATAACCTCAATGTCTGGTTAGTTTTCACAAACCGTTTGAAAATCGAGGTCTAGACTTTTTTTTTTCTTTTTTTTAAAATTTTTTTCCTTAGGGGCGGCGGTCCGGCGCGCGGCGGCGGTTGGCCGGTCGGGGGCGCAGCGGCGGCCGGGGGCGCGGCGGCGGCTCGGGCACGCGGCGGCGGTCGGGCGCGCGGCAGGCGGTCGGGAGCGCGGCAGGCGGTCGGGAGCGCGGCGGCTCGGGCGCGCGGCGGCGATCGGGCGTGCGGCGGCGGCTCGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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