SE2650059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7027
  • Oryza sativa
  • SE2650059
  • PIF/harbinger
  • To3
  • Chr03:3661861-3662223
  • GGC
  • GGCCCCTTTGATTCAAAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
            T   A     --------ATTT      ------     -- G     -    ------- TCTTATA   --- TTTTTTCTACAAAGCCCTTTGAATCAAAGGAATGAACCATATGGAATCCTATGAAATTCCTATGGAATGCCTCTTCACATAAAAGTTTTGGAGGAATTTTAACAAGAGGTAG
 GGCCCCTTTGA TCA AGGAA            ATAGGA      ATTTT  A AGGAT TTCA       T       GGA   A                                                                                                                
 ||||||||||| ||| |||||            ||||||      |||||  | ||||| ||||       |       |||   |                                                                                                                A
 CCGGGGAAACT AGT TTCTT            CCTTAT      TGTAT  T AAGAC ATAC       C       ACA   T                                                                                                                
C           T   A     ACTTTTTTGACT      CCTTTT     CC -     T    TTACTTT -------   TTT GTCTCCTAACGTTTTGTGTCTTTTCTGTATTATTACTGGCAAACTAACCTGGTGTCCTTTTTGTGTCCTTAAACTCCTCTCTATTTCTGAGTTTCCTAAAGAAGGTACTCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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