SE2650060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7028
  • Oryza sativa
  • SE2650060
  • PIF/harbinger
  • To3
  • Chr01:31744771-31745118
  • GGG
  • GGGCCTCTTCGGATTGAGGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
    CTC         A      T  GTAGGATTTTCAAGGGAATACTGTAGATAGGAAATATTTCCTTTCCTGACATTCGGTTCATAGGAATCGACCCAAAGAAAAATCAGAGGAAAAATTCCTTTCATGTGGAATCAATAGAGAAACAAAGGAAAATTTCCATCCACTCCTA
GGGC   TTCGGATTG GGGATT TT                                                                                                                                                    
||||   ||||||||| |||||| ||                                                                                                                                                    C
CCCG   AAGCCTAGT CCCTAA CA                                                                                                                                                    
    AAT         G      -  TTTTTGCATCCTTATCCTTTTAGCATCCTTATACTATCCTTACATACACATTTTGTCTCCTAACTTTTTGTGTCCTTAAGACATCTATCCTAACCATTTGTACACAAGCCTATCCGTTTCTTTTTTGTATCCTTTACCTTTTTTACTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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