SE2650061

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7029
  • Oryza sativa
  • SE2650061
  • PIF/harbinger
  • To3
  • Chr07:17953739-17954175
  • GGG
  • GGGCTTATTCGGAATGGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
             A      ATCGAAAAAACACAGGAATAGGAAA    -  GGAATATGATAGGAATGCACGTGTAAAACAGAGAATTGAAAAACATAGGAATACTATATAAACATGCGTTCGGATAGAGCGTAGGAAAAACATAGGAATTTTTAAAGAACCTACCCACTAACTAAAATCATCATGTGTCAGAGGAGTGAAGCTTGTGAAGATTAGTTTGTTGATTGCC
GGGCTTATTCGGA TGGAGG                         ATCA TA                                                                                                                                                                                  
||||||||||||| ||||||                         |||| ||                                                                                                                                                                                  T
CCCGAATAAGCCT GCCTCC                         TTTG GT                                                                                                                                                                                  
             A      -----------------------CA    A  CCTTTTTGTATCCTAGACGTAAGGATACCTAAGCCCATGACATCGTCGTAAGCCTAGTTTCCTTAGGGGACATCCTTTTAGTCTCCTTTAAGCTTCCTTTTAAAGGAACCGGTAGGTAAGGTGTCCTTTTGTTTGTTAGGTGAGGTTGGAGAAAAATAAAAAGGACACGTACCCTTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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