SE2650062

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7030
  • Oryza sativa
  • SE2650062
  • PIF/harbinger
  • To3
  • Chr03:1603350-1603713
  • GGG
  • GGGCCCCTTTGAATCAAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
               AA   -------AATTATA       -----           CAAATCCT  ------------   AAATTTCCCTATTTTGCCCTTTAATTCAAAGGATTGAAGCTTTCCAAATCCTATGAAATTCCTACGGAATGGCACATTGCATGTGGATTTTGGAGGAAATTTAGCAAGAGCTCCAA
GGGCCCCTTTGAATC  AGG              TAGGAAT     TTCATAGGATT        AT            AGG                                                                                                                    
|||||||||||||||  |||              |||||||     |||||||||||        ||            |||                                                                                                                     
CCCGGGGAAACTTAG  TCC              CCTTATC     TGTGTCCTAAG        AC            CAC                                                                                                                    
               CA   CATCTTTTTTGCCT       CTTTT           --------  TGTCCTTAACTT   ATTTTGTCTCCTAACGTTTTGTGTCCTTTTTGTGTCCTTACCAGCAAACTAACCTCGCGTCTTTTTTGCGTCCTTAGCCTACTCTCTCTATCTGAATTTCCTTTAAAAGGTTCTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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