SE2650063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7031
  • Oryza sativa
  • SE2650063
  • PIF/harbinger
  • To3
  • Chr01:25241496-25241860
  • GGG
  • GGGCCCCTTTGATTTGTAGGAAAAGTGTAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
            T         -----     T     ATTTGA     TTCAATCCTATGGAAAAAAATTCTTATGAAAGCCTTTGAAACAAAGGATTGAATCCTATACTATCTTTTAAAATTCATATGGAATAGGTAATCCTATAGAGATTTTGGAGGAAAGTTAGCAAGAGGTCCAACCTCTTG
GGGCCCCTTTGA TTGTAGGAA     AAGTG AGGAA      AGGAT                                                                                                                                          
|||||||||||| |||||||||     ||||| |||||      |||||                                                                                                                                           
CCCGGGGAAACT AGCATCCTT     TTTAT TCCTT      CCTTT                                                                                                                                          
            T         ACCTT     C     ----AT     TTGTGTCCTAAGACTGTTCTTACATCCACATTTTGTCTCCTAACTTTTTATGTCCTTTTTGTATCCTTACTGGCAAACTAACCTGGCGTCCTTTTTGCGTCCTTAGTCTACTCTCTCTATCTGAGTTTCCTTAAAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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