SE2650064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7032
  • Oryza sativa
  • SE2650064
  • PIF/harbinger
  • To30
  • Chr04:33240459-33240607
  • GGG
  • GGGTGTGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
     G       ATCCCA  CATT         A     A  -ATT         CTAC     TTTCTGA        A
 GGGT TGTTTGG      GC    GAATGCCAT GCTAC GT    TTCGCCACG    AGTGT       GGCGGACG 
 |||| |||||||      ||    ||||||||| ||||| ||    |||||||||    |||||       |||||||| A
 CCCG ACGAACC      CG    CTTACGGTG CGGTG CG    GAGCGGTGT    TCACA       CCGCCTGC 
C    -       AACCGC  -AAC         -     C  CACC         --CC     -------        A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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