Plant MITE

SE2650065

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7033
Oryza sativa
SE2650065
PIF/harbinger
To31
Chr01:4788080-4788359
GGG
GGGGCTGTTTGGTT

Secondary structure and sequence

TSD TIR

5'

3'

              CACATA   -ACA     TA G   A        --TC    C   AC   -   ---A       GCCATCAAAATCCAAG     --     - CCAACAAA   AAACCATGCCACACTTTTTAGAGACATTT
GGGGCTGTTTGGTT      CTA    TTGCC  G TTT CCATGCTT    TTAG CAA  TTG TCA    AGGTGAG                CCACA  CTCTA G        ATG                             
||||||||||||||      |||    |||||  | ||| ||||||||    |||| |||  ||| |||    |||||||                |||||  ||||| |        |||                             A
CCCCGACAAACCAA      GAT    AACGG  T AAA GGTATGAA    AATC GTT  AAC GGT    TCCACTC                GGTGT  ACACC T        TCT                             
              -CTACC   ATTC     TG G   C        CTCC    T   CA   T   ACAA       --ACAAACCAACCGAA     TC     G --------   AAAGAGAAAACATTAGATCCAGGGTGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650065

GGGGCTGTTTGGTTCACATACTAACATTGCCTAGGTTTACCATGCTTTCTTAGCCAAACTTGTCAAAGGTGAGGCCATCAAAATCCAAGCCACACTCTAGCCAACAAAATGAAACCATGCCACACTTTTTAGAGACATTTACATGTGGGACCTAGATTACAAAAGAGAAATCTTGCCACACTTGTGGAAGCCAACCAAACACTCACCTAACATGGTCAAACTTGTCTAACCTCAAGTATGGCAAAGTGTGGCAACTTATAGCCATCAACCAAACAGCCCC

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