Plant MITE

SE2650066

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7034
Oryza sativa
SE2650066
PIF/harbinger
To32
Chr11:13384483-13384794
GGC
GGCCCTGTTTAGATCC

Secondary structure and sequence

TSD TIR

5'

3'

     C                AATGGTAAAAGTTTTACCATTTTGTAGCACTTTTTGCCATTTTGGATCTAAACACTAGTAGCAAAAGTTGGCAATTTGGCATTTGGCATTTGCTAGTCCATAGTAGCAAATTGTGCCAAAAAATGCTTTGGGACC
 GGCC TGTTTAGATCCTCTAA                                                                                                                                       
 |||| ||||||||||||||||                                                                                                                                        
 CCGG ACAAATCTAGGTAAAC                                                                                                                                       
C    -                CTTACCGTTTACCGTTTACCGTTTTCAAAACCATCGTTTTCAAAACCGTAACGTTTTCATGATCAACCACAAATCTACGTACAATTTCAAAACGGTAAGATCGTGATTTCACTCTCTCTCTTTCTCTCTCCCTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650066

GGCCCTGTTTAGATCCTCTAAAATGGTAAAAGTTTTACCATTTTGTAGCACTTTTTGCCATTTTGGATCTAAACACTAGTAGCAAAAGTTGGCAATTTGGCATTTGGCATTTGCTAGTCCATAGTAGCAAATTGTGCCAAAAAATGCTTTGGGACCACTCCCTCTCTCTTTCTCTCTCTCACTTTAGTGCTAGAATGGCAAAACTTTAACATGCATCTAAACACCAACTAGTACTTTTGCAATGCCAAAACTTTTGCTACCAAAACTTTTGCCATTTGCCATTTGCCATTCCAAATGGATCTAAACAGGCCC

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