Plant MITE

SE2650067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7035
Oryza sativa
SE2650067
PIF/harbinger
To33
Chr02:30643421-30643769
GGG
GGGCTTATTCGGATTAGAGGAACTTCACAGGAT

Secondary structure and sequence

TSD TIR

5'

3'

      A         --------         CAC     -----TTT   AGGAATACTGTATATAGGATTTTGTTCCTTTCCTGTCATTCGGATCATGAAAACTGGTTGTAGGAAATCCAAAGGAAAGTTTCCTTTGATGCTAATTTCACAGGAAAAGTACAGGAAAATCCATCCACCT
GGGCTT TTCGGATTA        GAGGAACTT   AGGAT        TGG                                                                                                                                  
|||||| |||||||||        |||||||||   |||||        |||                                                                                                                                  C
CCCGAG AAGCCTAAT        CTTTTTGAA   TCCTA        ATA                                                                                                                                  
      C         ATCCTATC         ---     TCCTTTAA   TCCTTATCCTTTCCTTAAATTCACATTTTATCTCCTTACTTTTTGTTTCCTTATGTTTTCAACTCTCGTAAGTCTAGTGTCCTTTAACTAACGGATCCTAAACGTACGTCTTTCGCTTTTTTTTCTCGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650067

GGGCTTATTCGGATTAGAGGAACTTCACAGGATTTTTGGAGGAATACTGTATATAGGATTTTGTTCCTTTCCTGTCATTCGGATCATGAAAACTGGTTGTAGGAAATCCAAAGGAAAGTTTCCTTTGATGCTAATTTCACAGGAAAAGTACAGGAAAATCCATCCACCTCGAGCTCTTTTTTTTCGCTTTCTGCATGCAAATCCTAGGCAATCAATTTCCTGTGATCTGAATGCTCTCAACTTTTGTATTCCTTTGTTTTTCATTCCTCTATTTTACACTTAAATTCCTTTCCTATTCCTATAAATTTCCTATCCTAAGTTTTTCCTATCCTATAATCCGAACGAGCCC

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