SE2650068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7036
  • Oryza sativa
  • SE2650068
  • PIF/harbinger
  • To34
  • Chr06:1547862-1548147
  • GGC
  • GGCCATTCCCAACCCAATGACTAGGATGGTGTCCATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                 T   --    -     G       CATTAAATAA   G    --  A     AAAAATAA   GACAAGTAAATAAATGAGGAAAGAGAAGGAAACCATGTCTTGCATGAGACATGGTTTCTACACAACATCCAAGACA
GGCCATTCCCAACCCAA GAC  TAGG ATGGT TCCATAG          GCT CCAC  CT GGATG        TAT                                                                            
||||||||||||||||| |||  |||| ||||| |||||||          ||| ||||  || |||||        |||                                                                             
CCGGTAAGGGTTGGGTT CTG  ATCT TATCA AGGTATT          TGA GGTG  GT AGTTC        TTT                                                                            
                 -   TA    G     A       ----------   -    TA  -     --------   GATCATGATCTGTGATGAGAAGGTTACGTTTGTGGTGATAAGGTATGAATTTAAATTACTATGGATAGAGTGAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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