Plant MITE

SE2650071

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7039
Oryza sativa
SE2650071
PIF/harbinger
To37
Chr07:4773869-4774126
GGG
GGGGCTGTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

    C       A    - TC      TTACCA   AATATTTGGCAAAGTGTGGCATGCCATACATTGTATAGCTAAGAATTTGTTGGCCACAATCGTGGCAAGTTATGGCAAAAAAAAATTACTCAATGACA
GGGG TGTTTGG TGAC T  CCTAGT      CAA                                                                                                  
|||| ||||||| |||| |  ||||||      |||                                                                                                   
CCCC ACAAACC AACT A  CGGTTG      GAA                                                                                                  
    A       -    C --      ------   ACGGTTTCAACACCGTTAGTTCAAACTGGTTAATTCGGATCACCAACAAAGTACGGTGTTCACTCAATACGGTGTTAAAAAATCGTTCGATCGGGTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650071

GGGGCTGTTTGGATGACTTCCCTAGTTTACCACAAAATATTTGGCAAAGTGTGGCATGCCATACATTGTATAGCTAAGAATTTGTTGGCCACAATCGTGGCAAGTTATGGCAAAAAAAAATTACTCAATGACAAGTGGGCTAGCTTGCTAAAAAATTGTGGCATAACTCACTTGTGGCATGAAACAACCACTAGGCTTAATTGGTCAAACTTGATTGCCACAACTTTGGCAAAGGTTGGCACTCAACCAAACAACCCC

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