Plant MITE

SE2650072

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7040
Oryza sativa
SE2650072
PIF/harbinger
To38
Chr08:10894293-10894572
GGG
GGGGTTGTTTGGTTTGCTCCTAAAGTTTACCA

Secondary structure and sequence

TSD TIR

5'

3'

            TT    --C    A    A   AAGG      C    CATGTTAGGTAAGTTTGACCAAGTTAGCATATTGTTTGGTTCATAGCCACACTTGTGGCAAGATTCCTTCTCATCTATTTGGGCCCCACATGT
GGGGTTGTTTGG  TGCT   CTAA GTTT CCA    TTACCA ACCT                                                                                             
||||||||||||  ||||   |||| |||| |||    |||||| ||||                                                                                              
CCCCGACAAACC  ACGA   GATT CAAA GGT    AGTGGT TGAA                                                                                             
            -T    TAT    -    C   GGTA      A    AAACACGGTATGAACGGATTCAACACCGAATGTTTTTCACTCGGTGTGGAATCGATCGTTTTAACCTAACACGGTGTGAAACAACTCAACTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650072

GGGGTTGTTTGGTTTGCTCCTAAAGTTTACCAAAGGTTACCACACCTCATGTTAGGTAAGTTTGACCAAGTTAGCATATTGTTTGGTTCATAGCCACACTTGTGGCAAGATTCCTTCTCATCTATTTGGGCCCCACATGTCATCAACTCAACAAAGTGTGGCACAATCCAATTTTGCTAGCTAAGGTGTGGCTCACTTTTTGTAAGCCACAACTTAGGCAAGTATGGCACAAAAAGTATGGTGAATGGTGGCAAACTTAGTATAGCATCCAAACAGCCCC

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