SE2650073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7041
  • Oryza sativa
  • SE2650073
  • PIF/harbinger
  • To39
  • Chr08:11881154-11881432
  • GGC
  • GGCCCTCTTTGTTTAGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                   --      TATTGGCCTAGACTTTTAAGTCAGCTTATTAGCTTATATGATTTATAAGCCGGTGGATTTAATGTCCTAAGTTTAGTAGTTGAGTCATACATCTACCTCACATAAGCCAAAAA
GGCCCTCTTTGTTTAGGCT  TAGGCT                                                                                                                 
|||||||||||||||||||  ||||||                                                                                                                 A
CCGGGAGAAACAAATCCGA  ATTCGG                                                                                                                 
                   AT      TTGAATATTCAGCTTTTCAGATTCGGATTTGTTTGTTCGTCGAAAAGGCAAACCGAAAAAACTTCGGTATTCGGTGAGATTGTGATAATTCGGTTTTCGATCCAACCTCTTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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