SE2650074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7042
  • Oryza sativa
  • SE2650074
  • PIF/harbinger
  • To4
  • Chr01:35030965-35031317
  • GGG
  • GGGCCTCTTTGAATCG

Secondary structure and sequence

TSD    TIR
5'



3' 
  G             CAAG     GAAAACATATTAATAGGAAAAACGTAGGAATTGAATACCACGCTTATTGGATTCCTATGGGATTTTGAAACACAGGAAAGTCTTCAAACTGTCGTTTGGTTAGCATACAGGAAAAACGCAGGAACCTTAGACACATGAAGAGGAAAACATGAG
GG CCTCTTTGAATCG    ATTGA                                                                                                                                                         
|| |||||||||||||    |||||                                                                                                                                                          
CC GGGGAAACTTAGT    TCCTT                                                                                                                                                         
  G             ---T     TTTGGTATCCTTAAGATCTCCTAAAATAGGATACCCTTTATTAGGATGTCTCAGGAAATTTTGTTTCCTAACAAAGGATAGTTAAGGAAACTTTAAGGATACCTTACTTGGAATGATCTCGTTAAAACCTCCTTTTATTCGTACTCTAGAGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3