SE2650076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7044
  • Oryza sativa
  • SE2650076
  • PIF/harbinger
  • To4
  • Chr02:24699021-24699289
  • GGG
  • GGCTTATTCGGTTCATAGGATTTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
G    -         CAT          AA   AAAGAATATGAAAAGTAAAAGATTAATTAGGATTCACATCCACTCCATTCCTTAGGATTTTTTTTCAAGAGGTCTTACCTCATGCTAAAAATCCTATGGAATT
 GGCT TATTCGGTT   AGGATTTTTA  TCA                                                                                                       
 |||| |||||||||   ||||||||||  |||                                                                                                       A
 CCGA GTAAGCCAA   TCCTAAAAAT  ATC                                                                                                       
     A         ATC          --   CTAATAACATCTTTAATTTAGGAATCCTAAAAAAAAGATATACGTAGTAAGCAAAGAATATTTACATCGGATGGTTTAAGGATTCCTAACATCAGAATGTTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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