SE2650077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7045
  • Oryza sativa
  • SE2650077
  • PIF/harbinger
  • To40
  • Chr03:29572495-29572689
  • GGG
  • GGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
     -------------            A        AAACTATTGGCAATGCCAAATCATGGGCAAGATTTTGCCAATGCCAATATTTTAGCAACATTTGT
GGGCT             TGTTTGGTTTGC ACCATGCC                                                                 
|||||             |||||||||||| ||||||||                                                                 G
CCCGA             CGGTTTTGAACG GTATGGTT                                                                 
     CTAAACCAAACTT            -        TTATAACCATAAAACTTGTCATTAAAACCGTTACAAACCAAACGATGGTTATGAATGGTTATGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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