Plant MITE

SE2650080

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7048
Oryza sativa
SE2650080
PIF/harbinger
To43
Chr01:40975924-40976182
GGG
GGGTCTGTTTGGTTGTTGTCTAACATTGCCATAACT

Secondary structure and sequence

TSD TIR

5'

3'

    T          - T  T   -           A  CAATT      AGATGTGGCATGGCAAACAAAGTGCGGCCAACAATTTGCTGGCTACAAGCGTAGCAATGTTTAGCTAGAAAATGAGTATATGACA
 GGG CTGTTTGGTT G TG CTA ACATTGCCATA CT     TGCCAT                                                                                     
 ||| |||||||||| | || ||| ||||||||||| ||     ||||||                                                                                      
 CCC GACAAACCAA C AC GAT TGTAACGGTGT GG     TGTACA                                                                                     
C   -          A C  -   A           -  -----      ATCTGTACGGTGTCTAACGATCGAATCGCAGACCAACGAACAAAGTCAACACCGTTCGGTGTAAAAGAACAAAGTACCCGGATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650080

GGGTCTGTTTGGTTGTTGTCTAACATTGCCATAACTCAATTTGCCATAGATGTGGCATGGCAAACAAAGTGCGGCCAACAATTTGCTGGCTACAAGCGTAGCAATGTTTAGCTAGAAAATGAGTATATGACATGTAGGCCCATGAAACAAGAAAATGTGGCTTGCCACAACTGAAACAAGCAACCAGACGCTAAGCTAGCAATCTGTGGCATGTCTAACATGTGGTGTGGCAATGTATAGCACCAAACCAAACAGCCCC

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