SE2650082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7050
  • Oryza sativa
  • SE2650082
  • PIF/harbinger
  • To45
  • Chr12:5372633-5372999
  • GGG
  • GGGCAGTCACAACTCTCCATCTAGGATGGTGTCTATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
        A      ------    TC    A            CATT   -     TGCCATGTAGGACTTTTAGCTTATGTGGCACTATATTAATTAAGAGAGAGTGAAGAGAGGAAGAAACTGGATCTTATGCAAGACACAGCTTCAACACGAGAACCTATGCACTAGACACTATCAAGTTTTGCAT
GGGCAGTC CAACTC      TCCA  TAGG TGGTGTCTATGG    AAC TACAT                                                                                                                                     
|||||||| ||||||      ||||  |||| ||||||||||||    ||| |||||                                                                                                                                     T
CCCGTCAG GTTGGG      AGGT  ATTC ATCACAGGTACC    ACG TACAG                                                                                                                                     
        G      TATCAC    --    -            ----   G     TTATTCTGTAGTGTTATCTTTGATGTGAGGTGTTGGGTACTAAAGAATCTCACCCGGTAATTATTTATGTAGTAGAGAGAAGAGATGGTTAATATAAATAAGAAGCAGATAATACTTCTGTGATAAGAGAGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3