Plant MITE

SE2650083

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7051
Oryza sativa
SE2650083
PIF/harbinger
To46
Chr02:20697175-20697422
GAG
GAGCAAGG

Secondary structure and sequence

TSD TIR

5'

3'

     A  ATAA    G  CTA   AA     A    TA      A AG  AGATAAAGAAAA -       TGTTGACTCTCATGCAAGAGCTAGCTCCACACAAGCTCCAAGAAATAGGTATTAAATTCAT
GAGCA GG    TGGT AG   AGC  GCTAT TACT  TGTGGA G  AG            G TAGGGAG                                                             
||||| ||    |||| ||   |||  ||||| ||||  |||||| |  ||            | |||||||                                                              
CTCGT CC    ATCA TC   TCG  TGATG ATGA  TTCGGT T  AA            T TCGATTG                                                             
     -  --AA    -  ATG   GG     A    TA      - AC  ------------ T       TACATATTATCCAATCGATATTCCAACCGAAATAAAAAAGTAGGAGAGAGAAATAGAGTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650083

GAGCAAGGATAATGGTGAGCTAAGCAAGCTATATACTTATGTGGAAGAGAGAGATAAAGAAAAGTAGGGAGTGTTGACTCTCATGCAAGAGCTAGCTCCACACAAGCTCCAAGAAATAGGTATTAAATTCATAGTGAGATAAAGAGAGAGGATGAAAAAATAAAGCCAACCTTATAGCTAACCTATTATACATGTTAGCTTTAACATTGGCTTATAGTAAGTAGTGGGCTGTACTACTAAACCTGCTC

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