Plant MITE

SE2640086

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7054
Oryza sativa
SE2640086
CACTA
Ca1
Chr11:24543754-24544549
CAC
CACTACAACAAAAC

Secondary structure and sequence

TSD TIR

5'

3'

              CATTGTTTTA        ---C       TCATTCTATAAGTCGTCTCTTTTTTATAAGTGAAATTGAAATAGGGACGATGTTTGAGACGCTTTATTAGTTGAGGACATAGTTTAAGACGCTTTACATGTTAGCACAAAATTAAATCGTTTAGAGACGAATATTGAGACGTTTTTGGAACGTCTCATGTGTAAGAAATGAGTTTTGAGACGTTTTTATTATATCCGTGTCATCGTTATTAGATAATATATAATTATTTATATAGAAAAAGAAGAAAATAAACACACTGTTCCTAATCGTCATCATCAAATACCATTATAATAATATTATAATTATTTGGAAAAAAAAATAAATATTTAATATTCAGTCTTAGATTAAAAAAGAAG
CACTACAACAAAAC          AGACGTTT    ACTTAAG                                                                                                                                                                                                                                                                                                                                                                    
||||||||||||||          ||||||||    |||||||                                                                                                                                                                                                                                                                                                                                                                    A
GTGATGTTGTTTTG          TCTGTAGA    ACATTCT                                                                                                                                                                                                                                                                                                                                                                    
              TTTGGTTTCC        ATAA       ATCTCTGCAAAATAAAACAGAGCGTGTCTATTGACTCTGCGAAAATATTTCGCAGCATCCTAGCAGAGACAAACGTGGCAGAGTCTTAATACCTCTGCGAAAAATTTCGCATGGATATAATAAATTCTGCAACGATCTCTGCACATTTAACGTAGAGATATTTTATATCTCTGAGAAAATATATCCGTGCGTGTAGAATTATATAAACTATAATTACGAAAGTAGACCCGAGCTTGTGTCGTGGACGTCCAACGTTTCAAGTACGTGATTGGTTCAGTAATTGCACTGTTAGAACTTCCATTTATCTATCAAAAAAAATATAACGTTGAGACGTTTGTACGCAGGACATCGCCATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2640086

CACTACAACAAAACCATTGTTTTAAGACGTTTCACTTAAGTCATTCTATAAGTCGTCTCTTTTTTATAAGTGAAATTGAAATAGGGACGATGTTTGAGACGCTTTATTAGTTGAGGACATAGTTTAAGACGCTTTACATGTTAGCACAAAATTAAATCGTTTAGAGACGAATATTGAGACGTTTTTGGAACGTCTCATGTGTAAGAAATGAGTTTTGAGACGTTTTTATTATATCCGTGTCATCGTTATTAGATAATATATAATTATTTATATAGAAAAAGAAGAAAATAAACACACTGTTCCTAATCGTCATCATCAAATACCATTATAATAATATTATAATTATTTGGAAAAAAAAATAAATATTTAATATTCAGTCTTAGATTAAAAAAGAAGAGTACCGCTACAGGACGCATGTTTGCAGAGTTGCAATATAAAAAAAACTATCTATTTACCTTCAAGATTGTCACGTTAATGACTTGGTTAGTGCATGAACTTTGCAACCTGCAGGTGCTGTGTTCGAGCCCAGATGAAAGCATTAATATCAAATATATTAAGATGTGCGTGCCTATATAAAAGAGTCTCTATATTTTATAGAGATGCAATTTACACGTCTCTAGCAACGTCTTAAATAATATAGGTACGCTTTAAAAAGCGTCTCCATAATTCTGAGACGGTGCAAACAGAGACGATCCTACGACGCTTTATAAAAGCGTCTCAGTTATCTGTGCGAGACAAAATAAAACGTCTCTATCTTACAAATAAGATGTCTCCTTTGGTTTGTTTTGTTGTAGTG

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