SE2650087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7055
  • Oryza sativa
  • SE2650087
  • PIF/harbinger
  • To5
  • Chr01:6980813-6981210
  • GGC
  • GGCCCTGTTTGATTCAGCTTAGGATTATTATAATCTAGCTTATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
           A         G                C      -     -      AAACAAACAAGTAGATAATTATAG   ATTATTATAATCTATAAGCCAGATTATTATAATCTGATAAGCTGCTCTAGAGGAGCTTTTTTCAGATTATTGAGTGGCTAAAGACCCACTACCCCTACATACTTGAGAAAAATTACTCACCTATGCC
GGCCCTGTTTG TTCAGCTTA GATTATTATAATCTAG TTATTA GGAGT AAGCTG                        CAG                                                                                                                               
||||||||||| ||||||||| |||||||||||||||| |||||| ||||| ||||||                        |||                                                                                                                                
CCGGGACAAAC AAGTCGAAT CTAATAATATTAGATC AATAAT CGGTC AATGAT                        ATT                                                                                                                               
           A         A                T      T     T      ------------------------   CGACCTAATATTATTCGACCGTATCTTATTCGACACTCAACAAACAAACAGACCTAATAACTTCCGTACCTAATAACCCAAACTTTCCGATTTCAGATATTACGGGAGTCGATAGACAAGCCAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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