Plant MITE

SE2650088

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7056
Oryza sativa
SE2650088
PIF/harbinger
To5
Chr11:16576887-16577229
GGC
GGCCCTGTTTCTTTCAGCTTGGGATTATTATAATCCAGATTATTGGG

Secondary structure and sequence

TSD TIR

5'

3'

                                   C           ------   AAG  - AAAGAAACAGACAACTTATTGAAGTAGCTTATTATAATCTGAAGCCCAGCTTATTATAATCTGATAAGCTCATTTAGGTGAGCTTTTTCCAGATTATTGGGTAAAAAATTACC
GGCCCTGTTTCTTTCAGCTTGGGATTATTATAATC AGATTATTGGG      AGT   CT G                                                                                                                 
||||||||||||||||||||||||||||||||||| |||||||||||      |||   || |                                                                                                                 C
CCGGGACAAAGAAAGTCGAATTCTAATAATATTAG TCTAATAACTC      ATG   AT T                                                                                                                 
                                   A           AATCTA   ---  A TCGATCTAACAATATTAGACATCATCTTATTCGCCAATCAACAAAGAAAGGATCTAATTATCTCGGATCTAATAACCCAAACGTTTAGATTTCTCCCTCACCCCACCGTACCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650088

GGCCCTGTTTCTTTCAGCTTGGGATTATTATAATCCAGATTATTGGGAGTAAGCTGAAAGAAACAGACAACTTATTGAAGTAGCTTATTATAATCTGAAGCCCAGCTTATTATAATCTGATAAGCTCATTTAGGTGAGCTTTTTCCAGATTATTGGGTAAAAAATTACCCACCATGCCACCCCACTCCCTCTTTAGATTTGCAAACCCAATAATCTAGGCTCTATTAATCTAGGAAAGAAACAACTAACCGCTTATTCTACTACAGATTATAACAATCTAGCTTATAGTAATCTAACTCAATAATCTAGATTATAATAATCTTAAGCTGAAAGAAACAGGGCC

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