SE2650089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7057
  • Oryza sativa
  • SE2650089
  • PIF/harbinger
  • To5
  • Chr03:35583784-35584093
  • GGC
  • GGCCCTGTTTGTTTCAGCTTAAGATTATTGTAATCTAGATTATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
           T         A              A        ----      A  --- CTCTAAGCTAGATTATAATAAGCTGACATAAAATAAGCTACGAGTTGTTTGTTTCTCTAGATTATTAGAGGCATCTAAGGGTAGTGGGTCTTTATCC
GGCCCTGTTTG TTCAGCTTA GATTATTGTAATCT GATTATTA    AATCAG TT   A                                                                                                 
||||||||||| ||||||||| |||||||||||||| ||||||||    |||||| ||   |                                                                                                  
CCGGGACAAAC AAGTCGAAT CTAATAATATTAGA CTAATAAT    ATTCGA CT   T                                                                                                 
           T         C              C        CCTC      -  TTG TTGTTCATCTAATAATACGATTTAATAATATTAGATATTCGGTCTAATGATATTAGGTTATTAGAGGAGATCTCCTCGAAAAAGGTCTAATAACTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3