Plant MITE

SE2650090

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7058
Oryza sativa
SE2650090
PIF/harbinger
To49
Chr03:22737261-22737553
GGG
GGGCAT

Secondary structure and sequence

TSD TIR

5'

3'

      CCAC    T -  TAT --       TAGTAAGAAATAAAATACTACTACTACCAGGTTGTATACATTGTGGAAGTAGTAAGTAACAAATACTAGGTAATATGCTTACTACCTAGCCATAAGCAATAAACAAATGATTTCTCTCAT
GGGCAT    AATA G CA   A  AAGTGGG                                                                                                                        
||||||    |||| | ||   |  |||||||                                                                                                                         
CCCGTA    GTGG T AC   A  TGATGGA                                                                                                                        
      ----    - T  --- AA       TGAAATTCTTATTCCCACCCGGTACACAGTCACCTATAATCAACAACAACATCGATGTTACCACTTTATTGTTTTCACCCATCATTCGACCTGGGGTGTTGGTAATAGGTACTCTCTCCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650090

GGGCATCCACAATATGCATATAAAGTGGGTAGTAAGAAATAAAATACTACTACTACCAGGTTGTATACATTGTGGAAGTAGTAAGTAACAAATACTAGGTAATATGCTTACTACCTAGCCATAAGCAATAAACAAATGATTTCTCTCATCCCTCTCTCATGGATAATGGTTGTGGGGTCCAGCTTACTACCCACTTTTGTTATTTCACCATTGTAGCTACAACAACAACTAATATCCACTGACACATGGCCCACCCTTATTCTTAAAGTAGGTAGTAAACATTGGTGATGCCC

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