Plant MITE

SE2650091

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7059
Oryza sativa
SE2650091
PIF/harbinger
To50
Chr03:23929793-23930051
GGG
GGGGATGTTTGGTTGATGCCTAACATTGCCAT

Secondary structure and sequence

TSD TIR

5'

3'

    A          -A    TA  A           AAGTTTAGGCTAGTTGTGGCATGGTGGCATAAATGTGGCTTAGAAATAGTTAGCCACAAGTGTGGCATGCTTAGCTCTAAATTTGAGAGCATG
GGGG TGTTTGGTTG  TGCC  AC TTGCCATAACT                                                                                             
|||| ||||||||||  ||||  || |||||||||||                                                                                              
CCCC ACAAACCAAC  ACGG  TG AACGGTGCGGT                                                                                             
    G          CA    TG  A           GTGAAATCGGTACGGTATCAAAAAATCCGTACACAAACCAAACGACGGCGTTAACACAATACGGTGTGAAAGAATTGAAACCCTGGGTGTACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650091

GGGGATGTTTGGTTGATGCCTAACATTGCCATAACTAAGTTTAGGCTAGTTGTGGCATGGTGGCATAAATGTGGCTTAGAAATAGTTAGCCACAAGTGTGGCATGCTTAGCTCTAAATTTGAGAGCATGACATGTGGGTCCCAAAGTTAAGAAAGTGTGGCATAACACAATTGCGGCAGCAAACCAAACACATGCCTAAAAAACTATGGCATGGCTAAAGTGTGGCGTGGCAAAGTGTGGCAACCAACCAAACAGCCCC

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