SE2650092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7060
  • Oryza sativa
  • SE2650092
  • PIF/harbinger
  • To51
  • Chr03:30872422-30872755
  • GAG
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
 GA      ACAAT  --  -CA  ------  AA          GAGCTTATGACTAGTCATATACATTATATGCACTAGCCATAAGACATTAAATGCTAAAAATAGCCATAAGCTTATGGCTCAACCTTAAAAAATAAAATAAAAAGATAAAGCACAGATGCATGCTAAAGAG
   GCATCT     GT  GC   TA      AG  TGAGCCATAA                                                                                                                                  
   ||||||     ||  ||   ||      ||  ||||||||||                                                                                                                                  G
   GTTGTA     GT  CG   TC      TA  TCTTTATTCC                                                                                                                                  
CCC      -----  TA  AAT  CAGAAC  --          ATCTAGGGTGATATGAGATACAGATACCGGTGTTACAACTTCCGTTCTTATCCACAATTCTACCTAGGGTGTAGATACATTTGTTTAAGATGAAATTTCATCCAGAGTGGTATGTTATTAGATAAGAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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