SE2650093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7061
  • Oryza sativa
  • SE2650093
  • PIF/harbinger
  • To52
  • Chr03:35148158-35148438
  • GGG
  • GGGCATCCACAATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
       CA       -    AAA G    --      GC   -  AATATTCCATTCAGCTACCTATTACCATTGTGCAACTAGTCCATATAGAAAAAATAGCAAAAGATATCCATATGCATATGGACTACCCATATGGAATAA
GGGCATC  CAATGTG GTGT   A TAGT  TCATAA  AAT AG                                                                                                   
|||||||  ||||||| ||||   | ||||  ||||||  ||| ||                                                                                                   A
CCCGTAG  GTTACAT TATC   G TTTC  TAGGTA  TAT TA                                                                                                   
       TG       A    --- -    AC      --   C  CCCTGGGTGTATTTATCAAATAGGGATACCGTTACAGGTGTTACATATCTATGTTCCATAGTAATCCTCTTCTCTCTCCTCATCTCTATCTATTATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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