SE2650094

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7062
  • Oryza sativa
  • SE2650094
  • PIF/harbinger
  • To53
  • Chr04:22026048-22026381
  • GGG
  • GGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
         C     ATAAAATTGAAGTGAGCATTAGTGTCAGGTTTTGGGTCAGAGGTAGTAGTTGTACGCAGGCAGCACAATGTGTATGAGATTTTAAGGTGGGGTCCACCAATAAAATATTCTCCAACCCTCAACCATTCATAAGTAAAGATGCTTTCATCCTG
GGGCAACAC AATGT                                                                                                                                                        
||||||||| |||||                                                                                                                                                        T
CCCGTAGGT GTTAC                                                                                                                                                        
         -     ACAACTCTTTGGTCCATTATCCGTAAGTTACGAGGAGATGTTGGACCATTATCGGTAACACCTTGATCATTTATTCATCATGGCCCATCATACGAATGATGGCTATCGTTCTCTTATTTATTACAACAAATGTGTTAGCTCTGTCTCTCTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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