Plant MITE

SE2650095

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7063
Oryza sativa
SE2650095
PIF/harbinger
To53
Chr02:20927111-20927459
GGG
GGGCATCAGCAATGTTTGCTATCC

Secondary structure and sequence

TSD TIR

5'

3'

               --    TAT  ACATC       GC  G    CAGATGACAGGCGGTAATAGAGGGAGACGTGCTCCACATTGCTTATATCTGTGAGTTGGCAGTAAGGTGGGGTCCATGGGGTAATAAAAATCGTAGCAAGGACAGAGCATGCATGCAACGGTTGGGAGAAG
GGGCATCAGCAATGT  TTGC   CC     GGTATTA  GT GGCC                                                                                                                                   
|||||||||||||||  ||||   ||     |||||||  || ||||                                                                                                                                   C
CCCGTAGTCGTTACA  AGCG   GG     CCATCAT  TC TTAT                                                                                                                                   
               CG    TTT  ----C       --  G    TTATGTGAGAATGATGGACCATAATTCGTAACACCCCGATCATGTATTGATGTTGGCCCAGTATGGGGATGACGGCCTTCGTTCCTTTATCTTATACGTACATGTGTCACAAAAGACTGTCGTTTTCGTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650095

GGGCATCAGCAATGTTTGCTATCCACATCGGTATTAGCGTGGGCCCAGATGACAGGCGGTAATAGAGGGAGACGTGCTCCACATTGCTTATATCTGTGAGTTGGCAGTAAGGTGGGGTCCATGGGGTAATAAAAATCGTAGCAAGGACAGAGCATGCATGCAACGGTTGGGAGAAGCAATGCTTTTGCTGTCAGAAAACACTGTGTACATGCATATTCTATTTCCTTGCTTCCGGCAGTAGGGGTATGACCCGGTTGTAGTTATGTACTAGCCCCACAATGCTTAATACCAGGTAGTAAGAGTGTATTTATTGCTTACTACCCGGTTTGCGAGCACATTGCTGATGCCC

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