SE2650096

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7064
  • Oryza sativa
  • SE2650096
  • PIF/harbinger
  • To54
  • Chr12:838604-839033
  • GGC
  • GGCCAGTCACAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
                 A    CATTGCACGGCTACCCAAAATATTATACCATCTTCTCTCAAATGAAATCTTTTATGAAACAATCCCCACAGTGGAGGGGTTTCACTTTGACGTTTCCAAGACTAAGCAAAGCATTTAATTGATACAAGTTGCTGGGATCATTTGTACCCAAAATCCGGCGCGGCGCGGGAGAATGCGGAGGTCGCACGGCGGA
GGCCAGTCACAATGGCT GTGT                                                                                                                                                                                                 
||||||||||||||||| ||||                                                                                                                                                                                                 G
CCGGTCAGTGTTACCCC CAAA                                                                                                                                                                                                 
                 -    GTGACCACACAGTACGTGTAAATTATCCCCATTCTGACTTATTTTTTACTAATAAACGTACTTTACCCCTACTCTCTCTTCCTTTCTCAAAGTAGGACCACTTTGAGCAGTCGCAGCAAAGGTTCAGGAGCCATTGTCTCACTTTGGGGGCAACTCCGGCTAAGCAAAGTAAGTGGCCTAGAGAACGCAGGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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