Plant MITE

SE2650097

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7065
Oryza sativa
SE2650097
PIF/harbinger
To55
Chr08:8593632-8593890
GGG
GGGGCTGTTTGGTTGGCT

Secondary structure and sequence

TSD TIR

5'

3'

    C        ---     CTCA      GCCATGCCAAACCTTAGACATGTCACAATTTGTTAGTATATTGTTTGGTTGGTTGTCACACTTGTGTCATGCCTCACTTTACTAGTCATTGGGCCTATGC
GGGG TGTTTGGT   TGGCT    AAGGTT                                                                                                    
|||| ||||||||   |||||    ||||||                                                                                                     
CCCC ACAAACCA   ACCGA    AATGAT                                                                                                    
    A        ACT     TTCA      ATGGAGTGAAACGGTGTTCACACAATACGGTGTGTTTCACTCCGATCGTTAAACAATCGGTGTTCACACCGATTCAAACCATTCTTAAACTCAGATATTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650097

GGGGCTGTTTGGTTGGCTCTCAAAGGTTGCCATGCCAAACCTTAGACATGTCACAATTTGTTAGTATATTGTTTGGTTGGTTGTCACACTTGTGTCATGCCTCACTTTACTAGTCATTGGGCCTATGCGTTATAGACTCAAATTCTTACCAAACTTAGCCACACTTGTGGCTAACAAATTGCTAGCCTCACTTTGTGTGGCATAACACACTTGTGGCAAAGTGAGGTATAGTAAACTTAGCCATCAACCAAACAACCCC

Copy Cancel