SE2650098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7066
  • Oryza sativa
  • SE2650098
  • PIF/harbinger
  • To56
  • Chr09:12620401-12620663
  • GAG
  • GCACCCGCAATGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GA              AAA   AG     CTCTATAAAACATGTACATCTCAGCAATAGACTCGATTAATAGTAAACCACCTTAATAGTATGTCTACATTGGTATCTATAGCTCTCTCATACATTGCCTCGTTT
  GCACCCGCAATGGT   GTA  GTGTT                                                                                                         
  ||||||||||||||   |||  |||||                                                                                                          
  CGTGGGTGTTACCA   ATA  GATAT                                                                                                         
CC              ---   --     CTGAGAGATATTCTCTAGGTACAGTCGTATAAAAAGATGAACTTTCCATAATTTACTTCTCTCTCTCGTTTTGATATATGATTGAATCTCTATCAGATATCTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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