SE2650099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7067
  • Oryza sativa
  • SE2650099
  • PIF/harbinger
  • To6
  • Chr03:5520178-5520519
  • GGG
  • GGGCCTGTTTAGTTCACGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
  G            A     AGAAA         ---     C       G    -  T G    CG    G --GTTTTC     C         AAC     T    ACTCGCCT     C                            A     C      A    TGG    T
GG CCTGTTTAGTTC CGAAA     ATTTTTAGG   TGTCA ATCGGAT TTTG AC G ATGT  GAAG G        GGATA GAATGAAAA   TAATT CATA        GGAAA CGCGAGACGAATCTTTTGAGCCTAATTA TCCAT ATTAGC CATG   GTTA 
|| |||||||||||| |||||     |||||||||   ||||| ||||||| |||| || | ||||  |||| |        ||||| |||||||||   ||||| ||||        ||||| |||||||||||||||||||||||||||| ||||| |||||| ||||   |||| T
CC GGACAAATTAAG GCTTT     TAAAGGTTT   GTAGT TAGCTTA AAAC TG T TACA  CTTC T        TCTAT TTTGTTTTT   ATTAA GTGT        CCTTT GCGCTCTGCTTAGAAAATTCGGATTAAT AGGTA TAATCG GTAT   CGAT 
  G            C     -----         TTT     A       G    G  - G    TA    G AATTTATA     T         --A     C    CAATCCCT     A                            C     C      -    TCA    G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End