SE2650100

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7068
  • Oryza sativa
  • SE2650100
  • PIF/harbinger
  • To6
  • Chr02:33097968-33098311
  • GGC
  • GGCCCGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
    -C        - G     TGAAAATTTTTAGGTGTCATATTAGACGTTTGACCGGATATCGAAAGGGGTTTTTGGACACGAATAAAAAAACTAATTTCATAAATCGCATGGAAACCGCGAGACGAATGTTTTGAGCCTAATTAATCCATCATTAGTACATGTGGGTTAC
GGCC  GTTTAGTT C TGAAA                                                                                                                                                       
||||  |||||||| | |||||                                                                                                                                                       T
CCGG  CAAATCAA G GTCTT                                                                                                                                                       
    TA        A -     ACAAAAAAAGTTTTTGTAGTGTAGCTTAGAAGTTTGTGTACGTACTTCGTAATTTATATCTATTTTTGTTTTTGATTAACGTATCAATCCCCCTTTTAACGCTCTGCTTAGAAAACTCGGATTAATCAGGAACTAATCGGTATTCACGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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