Plant MITE

SE2650101

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7069
Oryza sativa
SE2650101
PIF/harbinger
To59
Chr12:17596399-17596710
GGG
GGGCATCTCCAATGT

Secondary structure and sequence

TSD TIR

5'

3'

     T  C      TTA    CATAAATAGCATTAAGGTGGGTCCCACTATTCTTATGGTTATTACCACAATGTTTGAAGCAAGAGTAAACTTTAAGATGGGTCCCACAATGTACTATTCTAGTACTTCTTTTATCAGCCATGCAAATTTTTCATC
GGGCA CT CAATGT   TGAT                                                                                                                                       
||||| || ||||||   ||||                                                                                                                                       C
CCCGT GG GTTACA   CCGG                                                                                                                                       
     C  T      ---    TATTCTTCTCCGGTATTCCAAAATATCACTGGTATATGTAACACTTTGTTTTGGTATTCCGTAATTTACGTTTTCTTTCGAAATTCGAATACCGAACTGGTGTTTGTTATTTTATTATCCCATTTTACTTACACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650101

GGGCATCTCCAATGTTTATGATCATAAATAGCATTAAGGTGGGTCCCACTATTCTTATGGTTATTACCACAATGTTTGAAGCAAGAGTAAACTTTAAGATGGGTCCCACAATGTACTATTCTAGTACTTCTTTTATCAGCCATGCAAATTTTTCATCCTCACATTCATTTTACCCTATTATTTTATTGTTTGTGGTCAAGCCATAAGCTTAAAGCTTTCTTTTGCATTTAATGCCTTATGGTTTTGTTTCACAATGTATATGGTCACTATAAAACCTTATGGCCTCTTCTTATGGCCACATTGTGGCTGCCC

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