Plant MITE

SE2650102

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7070
Oryza sativa
SE2650102
PIF/harbinger
To60
Chr02:21081667-21081815
GGC
GGCAGTGTTTGGCAAATG

Secondary structure and sequence

TSD TIR

5'

3'

  CA        CA    --------------------TCTAA         TTTCCCACCCTTCT      CTTAATCATTCA
GG  GTGTTTGG  AATG                         GGGAAATGA              TTAAAT            
||  ||||||||  ||||                         |||||||||              ||||||            T
CC  CACAAACC  TTAC                         CCCTTTACT              AATTTA            
  CA        TA    CCTTTACTCCCCACCCTAACCCTAA         TATTTCCCAATCCT      CCTACTCCCTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650102

GGCAGTGTTTGGCAAATGTCTAAGGGAAATGATTTCCCACCCTTCTTTAAATCTTAATCATTCATTCTCCCTCATCCATTTAATCCTAACCCTTTATTCATTTCCCAATCCCAATCCCACCCCTCATTTCCCATTATCCAAACACACCC

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