SE2650103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7071
  • Oryza sativa
  • SE2650103
  • PIF/harbinger
  • To61
  • Chr03:33250071-33250393
  • GGC
  • GGCCATCCCCAACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
               A        CTAGTAGTTTCCATATTTGTCATGTCATATAGACACTATGTGTAGAAACTATGTATTCAATGGATGGTGTCTTCAAATTAAATTATCATCCAATCACCTCTCTTCTCTCTCCTTTTATCCACCTATCCCCTTAATTT
GGCCATCCCCAACCC GAAACTAT                                                                                                                                         
||||||||||||||| ||||||||                                                                                                                                         T
CCGGTAGGGGTTGGG GGTACAGT                                                                                                                                         
               A        AGATCAAAAGTATCGTAATTTATGTAACTGTGTATTCGTTTTTAGGATACACCGTTCTCTTAATTACTACTCTCTCCATTTTTCTACTTCTTTAGTAAAGAGTACGTTCTTTGGTAAAGATGTGTTCTTGGTTCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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