Plant MITE

SE2650104

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7072
Oryza sativa
SE2650104
PIF/harbinger
To64
Chr04:1532941-1533196
GGG
GGGGTTGTTTGGTTGC

Secondary structure and sequence

TSD TIR

5'

3'

    T           ----------A    -     TTGTCACGCCTAAAGTTAGTCATGCCACAGTTTTTTTAGCTATTGTTTGGTTCATGACACAACTGTGGCTAGCCACACATTTTCTCTATATGGCCC
GGGG TGTTTGGTTGC           TGCC ACAAA                                                                                                
|||| |||||||||||           |||| |||||                                                                                                C
CCCC ACAAACCAACG           CGGT TGGGG                                                                                                
    T           AATGATTGAAA    T     AATAATCCGTTCCACACCGACGGTGTTTTACACACCGATCGTTTTACGATCGGTGTTGAATCGGTTTCAATCGTTTTTATGATCACATACTGTACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650104

GGGGTTGTTTGGTTGCATGCCACAAATTGTCACGCCTAAAGTTAGTCATGCCACAGTTTTTTTAGCTATTGTTTGGTTCATGACACAACTGTGGCTAGCCACACATTTTCTCTATATGGCCCCACATGTCATACACTAGTATTTTTGCTAACTTTGGCTAAGTTGTGGCTAGCATTTTGCTAGCCACACATTTTGTGGCAGCCACACCTTGCCTAATAAGGGGTTTGGCAAAGTTAGTAAGCAACCAAACATCCCC

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