SE2650105

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7073
  • Oryza sativa
  • SE2650105
  • PIF/harbinger
  • To65
  • Chr05:21558926-21559232
  • GAG
  • GAGCAGGTTTAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
       TT     ----   CCTAATCAGCCAGCGCTAGCACGCTACGCTTCAGCCAAATCTGACGTGGAGAAGTGAGAAGGGAAGAAAAAGGATGGAGCGGACGTTCCATCTATCGCCCGGCTGAAGCGCAACACACGAGAAAATCAGGTGCG
GAGCAGG  TAATA    GAT                                                                                                                                      
|||||||  |||||    |||                                                                                                                                      A
CTCGTTC  ATTAT    TCG                                                                                                                                      
       CT     TATA   GTGGACGGCCGAGATATGATCATGGTACAGTGGATATCGGTAGTAATTATATTATCCGACCGACAATTCAATCGACAAACAAATGGAGATAACTTCTAAATCTGTAAATTATAAGCGTACATGTGGACTAAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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