SE2650106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7074
  • Oryza sativa
  • SE2650106
  • PIF/harbinger
  • To65
  • Chr04:32833556-32833890
  • GAG
  • GAGCAGGTTTAATAGTATCGCCGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
              --   ----TC      -------TACA       AATGTGTACCATGTCATCTTATAGCTAGAGAGTACAATAGTAAGCCGTTGACACGTTAAACAAGTAATATCTTTATTAATTTTTTAATCACCTCAATCTCTTTCTTCTTTACCCTTCCCTCTCTC
GAGCAGGTTTAATA  GTA      GCCGGC           GGCTATA                                                                                                                             
||||||||||||||  |||      ||||||           |||||||                                                                                                                              
CTCGTCCAAATTAT  CAT      CGGCCG           GTGCAGT                                                                                                                             
              TC   CTAACT      CTATACTCGAT       CTAACCTACTACTGTACCTGCTCTCTTTCCACCTTTCTCCCACGCTCGCCTACCATTTAATCAGCGATCGCGTGTGCTCGAGGATCCGCGGACACGTAACGAAAAACAGTCACAACGTCGCCTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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