SE2650107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7075
  • Oryza sativa
  • SE2650107
  • PIF/harbinger
  • To65
  • Chr04:363210-363512
  • GAG
  • GAGCAGGTATAATAGGTTACAGTCAGCAGGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
        A      GT AC         G   T   A -  TTCATCTAAGATAAATCCTACATGGAAGAGTGAGAAAACAGGAGAGAGAGAGTAGCCGGCGCTTAATCTATCGCCGGGCTGCAGCTGTAGAAAAAGCATCATGACCAATCGT
GAGCAGGT TAATAG  T  AGTCAGCAG CGG AGT C TA                                                                                                                
|||||||| ||||||  |  ||||||||| ||| ||| | ||                                                                                                                C
CTCGTCCA ATTATC  A  TCGGTCGTT GCC CGA T TC                                                                                                                
        A      AT --         -   -   - G  TTTGAGGTTGAGTCGTTTTTTTTTATAAAAGAGTGTCAGATAAGAGAGAGTAACTCCCGTAACCCTTCGCACGTTTACCACCCTTTTCAAACGTAGACGTCGTACGTACCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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