Plant MITE

SE2650109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7077
Oryza sativa
SE2650109
PIF/harbinger
To67
Chr07:2791761-2792163
GAG
GAGCATTACCAACAGATTATCTATA

Secondary structure and sequence

TSD TIR

5'

3'

         C     A         ATTTTC        AAT        --- GTTTCCTAAACTGAAAATAGGAAGTGAAAAAACTCCTCCCTCCAACAGATAGCCTAAATTCAATCCCTAAAACTTAAAAGTGGACCCTTTTGTTAAACTACCAAGAGAAAATTCCGTTTTTTTTTCACGCGCAGAAAGATCGCTATCTCCC
GAGCATTAC AACAG TTATCTATA      TCCTAAAA   TGTTTTTA   G                                                                                                                                                       
||||||||| ||||| |||||||||      ||||||||   ||||||||   |                                                                                                                                                       A
CTCGTAGTG TTGTC GATGGATAT      AGGGTTTT   GATTAAAA   C                                                                                                                                                       
         A     A         --ACTA        ---        CTC CTAAAATCAGGTTTTTAGTCGAGGTTGTCTAGGGGATGAGAGGATGGGCTCAAAACCTCAAGGGAAGGGGGCCAAGGAACGAGGCAAATATATGCCCGCGCTTTCAGCGAGGGTTAGTGCGTTAGGGCGGAGAGAGGAAGCAAGGGCGCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650109

GAGCATTACCAACAGATTATCTATAATTTTCTCCTAAAAAATTGTTTTTAGGTTTCCTAAACTGAAAATAGGAAGTGAAAAAACTCCTCCCTCCAACAGATAGCCTAAATTCAATCCCTAAAACTTAAAAGTGGACCCTTTTGTTAAACTACCAAGAGAAAATTCCGTTTTTTTTTCACGCGCAGAAAGATCGCTATCTCCCATGCGCGGGAACGAAGGAGAGAGGCGGGATTGCGTGATTGGGAGCGACTTTCGCGCCCGTATATAAACGGAGCAAGGAACCGGGGGAAGGGAACTCCAAAACTCGGGTAGGAGAGTAGGGGATCTGTTGGAGCTGATTTTTGGACTAAAATCCCTCAAAATTAGTTTTGGGAATCATATAGGTAGACTGTTAGTGATGCTC

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