Plant MITE

SE2650110

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7078
Oryza sativa
SE2650110
PIF/harbinger
To68
Chr08:3496490-3496726
GGG
GGGCTGTTTGGTTCACTCCCTCACTTTGCTAAACTTT

Secondary structure and sequence

TSD TIR

5'

3'

G   C                TC  T                   -   -CT    T -- TTGTTTGTTTCACTTCCAAAGTTGTGGCATGCCAAAGTTTTTCAATTCAAAGGCCCACAT
 GGG TGTTTGGTTCACTCCC  AC TTGCTAAACTTTGTCACAC TTT   AGGA A  C                                                            
 ||| ||||||||||||||||  || ||||||||||||||||||| |||   |||| |  |                                                            G
 CCC ACAAACCAAGTGAGGG  TG AACGGTTTGGAGGTACAGT TGT   GATT T  A                                                            
    A                TT  T                   T   ATC    - AA CACCGAATATTTAACTACCGGTGTGGAATCCGTTGAAAACCGATTTTCTACCCACATACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650110

GGGGCTGTTTGGTTCACTCCCTCACTTTGCTAAACTTTGTCACACTTTCTAGGATACTTGTTTGTTTCACTTCCAAAGTTGTGGCATGCCAAAGTTTTTCAATTCAAAGGCCCACATGTCATACACCCATCTTTTAGCCAAAAGTTGCCTAAGGTGTGGCCATCAATTTATAAGCCACAAATTTAGCTATGTTTGACATGGAGGTTTGGCAATGTTTGGGAGTGAACCAAACAACCC

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