SE2650111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7079
  • Oryza sativa
  • SE2650111
  • PIF/harbinger
  • To7
  • Chr08:18581989-18582322
  • GAC
  • TGTTTAGATGGGACTAAAACTTTTAAGTCCCTAT

Secondary structure and sequence

TSD    TIR
5'



3'
GACCC     A   ---      AA      TA         CACATCGAAT     A         ATAAA       C          A      -CCCATC     -TCTT  A      C C         CTATC              C        CCT    GA   TA
     TGTTT GAT   GGGACT  AACTTT  AGTCCCTAT          GTTTG ACACTAATT     TATTAAA ATAGACTATT ATAAAA       CATAA     AG CTAATT G GAGACGAAT     GAGCCTAATTAATC ATGATTAG   ATGT  TGC  
     ||||| |||   ||||||  ||||||  |||||||||          ||||| |||||||||     ||||||| |||||||||| ||||||       |||||     || |||||| | |||||||||     |||||||||||||| ||||||||   ||||  |||   
     ACAAA CTA   CCCTGA  TTGAAA  TCAGGGATA          TAAAT TGTGATTAA     ATAATTT TATCTGATGA TGTTTT       GTATT     TC GATTAA C CTCTGTTTA     TTCGGATTAATTAG TATTAATC   TACA  ATG  
CCACC     C   AGT      -A      --         ----------     C         ATCTC       A          A      AATTAAT     TACTT  -      A A         AAAAA              A        TCT    -A   AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End