Plant MITE

SE2650112

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7080
Oryza sativa
SE2650112
PIF/harbinger
To7
Chr04:18817040-18817379
GGC
GGCCCGGTTTAGTTCCCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

     G                TTTTTG    G GGT        T   ATAC  A    CATT  A         C  T T TAAT  C     AAATTA   A    GCCAGGAAACTGCGAAACAAATTTATTAAGCCTAATTAATCCGTCATTAGCAAATGTTTACTGTAGC
GGCCC GTTTAGTTCCCAAAAT      TTTT G   GTCACATC GAT    GG CACA    TG AGTATTAAA GT G C    AA AAAAC      CAG TTCC                                                                   
||||| ||||||||||||||||      |||| |   |||||||| |||    || ||||    || ||||||||| || | |    || |||||      ||| ||||                                                                    
CCGGG CAAATCAAGGGTTTTG      AAAA T   TAGTGTAG TTA    CC GTGT    AC TCATAATTT CA C G    TT TTTTG      GTT AATG                                                                   
     A                ---TTG    G GGG        C   CAAA  C    ACGT  C         A  C T --TT  T     ------   -    TGTTAACCGCACATTTAACACTCTGCTTAGAAAATTCGGATTAATGCGTTACTAAACTGTTACACCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650112

GGCCCGGTTTAGTTCCCAAAATTTTTTGTTTTGGGGTGTCACATCTGATATACGGACACACATTTGAAGTATTAAACGTTGTCTAATAACAAAACAAATTACAGATTCCGCCAGGAAACTGCGAAACAAATTTATTAAGCCTAATTAATCCGTCATTAGCAAATGTTTACTGTAGCACCACATTGTCAAATCATTGCGTAATTAGGCTTAAAAGATTCGTCTCACAATTTACACGCCAATTGTGTAATTGGTTTTTTTTTGTCCACATTTAATACTCCATGCATGTGCCCAAACATTCGATGTGATGGGTGAAAAGTTGTTTTGGGAACTAAACAGGGCC

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